Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs150759448 | chr20:30242201 | G/A | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs1560008 | chr12:9808069 | G/C | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs16836160 | chr2:201813830 | G/A | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs16836202 | chr2:201793024 | AGCT/A | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs16913477 | chr12:9812413 | C/T | 0.000125 | 67 | 7.6 | 21.8 | 27.88 | KM Plot |
UVM | rs16968682 | chr17:37386899 | A/G | 1.7E-7 | 67 | 0.32 | 35.5 | 26.55 | KM Plot |
UVM | rs17093661 | chr20:30429158 | T/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs17253922 | chr20:30287696 | C/T | 0.000118 | 67 | 7.6 | 8.18 | 27.92 | KM Plot |
UVM | rs17339879 | chr20:30370892 | A/G | 0.000118 | 67 | 7.6 | 8.18 | 27.92 | KM Plot |
UVM | rs17671194 | chr15:40667539 | T/C | 5.12E-7 | 66 | 26.55 | 24.87 | 1.27 | KM Plot |
UVM | rs17746659 | chr15:40859951 | C/A | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |
UVM | rs17747399 | chr15:40909696 | T/C | 1.26E-5 | 67 | 27.87 | 24.87 | 17.07 | KM Plot |
UVM | rs17749179 | chr15:29417057 | C/T | 7.23E-5 | 67 | 7.6 | 40.1 | 26.13 | KM Plot |
UVM | rs1977117 | chr1:84275319 | A/G | 0.000638 | 67 | 26.5 | 27.93 | 17.1 | KM Plot |
UVM | rs2110728 | chr2:201965678 | G/A | 3.74E-7 | 66 | 24.62 | 27.9 | 1.27 | KM Plot |